Publications - Plant Ecology and Phytochemistry
- 2012
Publications 2012
Bertola L, Vrieling K, de Iongh HH. (2012) Conservation Genetics of the Lion: New Approaches to Species Conservation. In: Genetic Diversity: New Research Editors: JA. Cervantes Amaya and MM Franco Jimenez, NOVA publishers. In press.
de Jong TJ, Hesse E. (2012) Selection against hybrids in mixed populations of Brassica rapa and Brassica napus: model and synthesis. New Phytologist 194: 1134-1142.
Kirk H, Cheng D, Choi YH, Vrieling K, Klinkhamer PGL. (2012) Transgressive segregation of primary and secondary metabolites in F2 hybrids between Jacobaea aquatica and J. vulgaris. Metabolomics 8: 211-219.
Kirk H, Vrieling K, Pelser PB, Schaffner U. (2012) Resistance to specialist herbivores: plant chemistry, resource use strategy, or phylogeny? Oecologia 168: 1043-1055.
Kos SP, de Jong TJ, Tamis WLM. (2012) Can transgenic crops go wild: a literature study on using plant traits for weediness pre-screening. COGEM report 2012-01
Markova E, Beeren Z, van Kolfschoten T, Strukova T, Vrieling K. (2012) Differentiating sibling species in the fossil record: a comparison of morphological and molecular methods to identify Microtus arvalis and Microtus rossiaemeridionalis (Arvicolinae, Rodenia). J. Systematic Paleontology 10: 585-597.
Mirnezhad M, Schidlo N, Klinkhamer PGL, Leiss KA. (2012) Variation in genetics and performance of Dutch western flower thrips populations. Journal of Economic Entomology. In Press.
Nuringtyas TR, Choi, YH, Verpoorte R, Klinkhamer PGL, Leiss KA. (2012) Differential tissue distribution of metabolites in Jacobaea vulgaris, Jacobaea aquatica and their crosses. Phytochemistry 78: 89-97.
Plischke A, YH Choi, PM Brakefield, PGL Klinkhamer, M Bruinsma. (2012) Metabolomic plasticity in GM and non-GM potato leaves in response to aphid herbivory and virus infection. Journal of Agricultural and Food Chemistry 60: 1488-1493.
- 2011
Publications 2011
Ali K, Maltese F, Fortes AM et al. (2011) Monitoring biochemical changes during grape berry development in Portuguese cultivars by NMR spectroscopy. Food Chemistry 124(4): 1760-1769.Bertola L, Vrieling K, de Iongh HH. (2011) Conservation Genetics of the African Lion. WAZA news 3/11: 2-4.
Bertola LD, van Hooft WF, Vrieling K, Uit de Weerd DR, York DS, Bauer H, Prins HHT, Funston PJ, Udo de Haes HA, Leirs H, van Haeringen WA, Sogbohossou E, Tumenta PN, de Iongh HH. (2011) Genetic diversity, evolutionary history and implications for conservation of the lion (Panthera leo) in West and Central Africa. J. Biogeography. 38: 1356-1367
Cheng D, Kirk H, Mulder PPJ, Vrieling K, Klinkhamer PGL. (2011) Variation of pyrrolizidine alkaloid expression in above-ground and below-ground parts of segregating hybrids between Jacobaea vulgaris and J. aquatica. New Phytologist. 192: 1010-1023.
Cheng D, Kirk H, Vrieling K, Mulder PPJ, Klinkhamer PGL. 2011. the relationship between structurally different pyrrolizidine alkaloids and western flower thrips resistance in F2 hybrids of Jacobaea vulgaris and Jacobaea aquatica. Journal of Chemical Ecology 37: 1071-1080.
Cheng D, Vrieling K, Klinkhamer PGL. (2011) The effect of hybridization on secondary metabolites and herbivore resistance: Implications for the evolution of chemical diversity in plants. Phytochem. Rev. 10: 107–117.
Van Dam NM and E van der Meijden (2011) A role for metabolomics in plant ecology. Annual Plant Reviews 43: 87-107.
Doorduin LJ, Vrieling K. (2011) A review of the phytochemical support for the shifting defence hypothesis. Phytochem. Rev. 10: 99–106
Doorduin L, Gravendeel B, Lammers Y, Ariyurek Y, Chin-A-Woeng T, Vrieling K. (2011) The complete chloroplast genome of 17 individuals of pest species Jacobaea vulgaris: SNPs, microsatellites and barcoding markers for population and phylogenetic studies. DNA Research. 18: 93-105
Grebenstein C, Choi YH, Rong J, de Jong TJ, Tamis WLM (2011) Metabolic fingerprinting reveals differences between shoots of wild and cultivated carrot (Daucus carota L.) and suggests maternal inheritance or wild trait dominance in hybrids. Phytochemistry 72: 1341-1347.
Hesse E, JR. Pannell (2011) Sexual dimorphism in androdioecious Mercurialis annua, wind-pollinated herb. International Journal of Plant Sciences. 172: 49-59.
Hesse E, JR Pannell (2011). Sexual dimorphism in a dioecious population of the wind-pollinated herb Mercurialis annua: the interactive effects of resource availability and competition. Annals of Botany 107: 1039-1045.
Hesse E., Pannell J.R (2011). Density-dependent pollen limitation and reproductive assurance in a wind-pollinated herb with contrasting sexual systems. Journal of Ecology 99(6), pp. 1531-1539, 2011.
de Jong TJ, Hermans CM & van der Veen-van Wijk CAM (2011) Paternal effects on seed mass in Arabidopis thaliana. Plant Biology 13: 71-77.
de Jong TJ, Klinkhamer PGL, Shmida A, Thuijsman F (2011) On the evolution of protandry and the distinction between preference and rank order in pollinator visitation. Evolutionary Ecology Research 13: 307-314.
de Jong TJ (2011) Pollination crisis, plant sex systems and predicting evolutionary trends In attractiveness. Pp 28-43 in Evolution of plant-pollinator interactions. Ed. S. Patiny, Cambridge University Press.
Joosten LP, J. A. van Veen (2011) Defensive properties of pyrrolizidine alkaloids against microorganisms. Phytochemistry Reviews 10: 127-136.
Joosten L, Cheng D, Mulder PPJ, Vrieling K, van Veen JA, Klinkhamer PGL. (2011) The genotype dependent presence of pyrrolizidine alkaloids as tertiary amine in Jacobaea vulgaris. Phytochemistry 72: 214–222.
Kirk H, Cheng D, Choi Y, Vrieling K, Klinkhamer P. 2011. Transgressive segregation of primary and secondary metabolites in in F2 hybrids between Jacobaea aquatica and J. Vulgaris. Metabolomics. DOI:10.1007/s11306-011-0301-8
Leiss KA, YH Choi, R Verpoorte and PGL Klinkhamer. (2011) An overview of NMR-based metabolomics to identify secondary plant compounds involved in host plant resistance. Phytochemistry Reviews 10: 205-216.
Leiss KA. (2011) Management practices for control of ragwort species. Phytochemistry Reviews 10: 153-163.
Luijten SH, TJ de Jong (2011) Hybridisation and introgression between Brassica napus and Brassica rapa in the Netherlands. COGEM report 2011-06.
Stech M, Kolvoort E, Loonen MJJE, Vrieling K, Kruijer JD. (2011). Bryophyte DNA sequences from faeces of an arctic herbivore, barnacle goose (Branta leucopsis). Mol. Ecol. Res. 11: 404-408.
- 2010
Publications 2010
Ali K, F Maltese, YH Choi, R Verpoorte (2010) Metabolic constituents of grapevine and grape-derived Products. Phytochemistry Reviews 9(3): 357-378.
Bruinsma M, SH van Broekhoven, EH Poelman, MA Posthumus, MJ Müller, JJA van Loon, M Dicke (2010) Inhibition of lipoxygenase affects induction of both direct and indirect plant defences against herbivorous insects. Oecologia 162: 393-404
Czajkowski, R., W.J. de Boer, J.A. van Veen, & J.M. van der Wolf, 2010. Downward vascular Translocation of a green fluorescent protein-tagged strain of Dickeya sp. (Biovar 3) from stem and leaf Inoculation sites on potato. Phytopathology 100, 1128-1137
LJ Doorduin, K van den Hof, K Vrieling, J Joshi (2010) The lack of genetic bottleneck in invasive Tansy ragwort populations suggests multiple source populations. Basic and Applied Ecology 11(3): 244-250.Drigo B, AS Pijl, H Duyts, A Kielak, HA Gamper, MJ Houtekamer, HTS Boschker, PLE Bodelier, AS Whiteley, JA van Veen & GA Kowalchuk (2010) Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2. PNAS, 107, 10938-10942.
Hannula SE, W de Boer & JA van Veen (2010) In situ dynamics of soil fungal communities under different genotypes of potato, including a genetically modified cultivar. Soil Biology & Biochemistry 42: 2211-2223.
HolWHG, W de Boer, AJ Termorshuizen, KM Meyer, JHM Schneider, NM van Dam, JA van Veen & WH van der Putten (2010) Reduction of rare soil microbes modifies plant– herbivore interactions. Ecology Letters, 13: 292–301
de Jong TJ (2010) General surveillance of Genetically Modified plants in the EC and the need for controls. Journal fur Verbraucherschutz und Lebensmittelsicherheit, Journal of Consumer Safety 5(2): 181-183.
Joosten L, PPJ Mulder, K Vrieling, JA van Veen, PGL Klinkhamer (2010) The analysis of pyrrolizidine alkaloids in Jacobaea vulgaris; a comparison of extraction and detection methods. Phytochemical Analysis 21 (2): 197-204.
Joosten L, PPJ Mulder, PGL Klinkhamer & JA van Veen (2010) Soil-borne microorganisms and soil-type affect pyrrolizidine alkaloids in Jacobaea vulgaris. Plant and Soil 325: 133-143.
Kielak A, JLM Rodrigues, EE Kuramae, PSG Chain, JA van Veen & GA Kowalchuk (2010) Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil . FEMS Microbial Ecology 71: 23-33
Kim HK, S Khan, EG Wilson, SD Prat Kricun, A Meissner, S Göraler AM Deelder, YH Choi, R. Verpoorte (2010) Metabolic classification of south American Ilex Species by NMR-based metabolomics. Phytochemistry 71(7): 773-784.
Kim HK, YH Choi, R Verpoorte (2010) NMR-based metabolomic analysis of plants. Nature Protocols 5(3): 536-549.
Kim HK, Verpoorte, R (2010) Sample preparation for plant metabolomics phytochemical analysis 21(1): 4-13
Kirk H, Vrieling K, Van der Meijden E et al. (2010) Species by environment interactions affect pyrrolizidine alkaloid expression in Senecio jacobaea, Senecio aquaticus, and their hybrids. Journal of Chemical Ecology 36 (4): 378-387
Kooi RE (2010) Darwin in Leiden. Ginkgo uitgeverrij ISBN 10: 9071256103, ISBN 13: 9789071256103
Kooi RE (2010) De ontvangst in Leiden van Darwins On the Origin of Species.Leidsch Jaarboekje 2010 - Jaarboekje voor geschiedenis en oudheidkunde van Leiden en Omstreken. Honderdentweede Deel. Historische Vereniging Oud Leiden pp 108-125.
Kuramae EE, HA Gamper, E Yergeau, YM Piceno, EL Brodie, TZ deSantis, GL Andersen, JA van Veen & GA Kowalchuk (2010) Microbial secondary succession in a chronosequence of chalk grassland. ISMEJ 4: 711-715
Leiss KA (2010) Metabolomics: a new tool in the struggle against thrips. Origin 2: 11-13
Liu NQ, YH Choi, R Verpoorte, F van der Kooy (2010 Comparative quantitative analysis of artemsinin by chromatography and qNMR. Phtochemical Analysis 21(5): 451-456López-Gresa MP, F Maltese, JM Bellés, V Conejero, HK Kim, YH Choi, R Verpoorte (2010) Metabolic response of tomato leaves upon different plant-pathogen interactions. Phytochemical Analysis 21, 89-94
Luijten SH & de Jong TJ (2010) Distribution of Brassica napus L and Brassica rapa L. populations in the Netherlands. Rapport COGEM 2010-03.
Lubbe A, B Pomahaová, YH Choi, R Verpoorte (2010) Analysis of metabolic variation and galanthamine content in Narcissus bulbs by 1H NMR. Phytochemical Analysis 21: 66-72.
Mirnezhad M, RR Romero-González, KA Leiss, YH Choi, R Verpoorte, PGL Klinkhamer (2010) Metabolomic analysis of host plant resistance to thrips in wild and cultivated tomatoes. Phytochemical Analysis 21: 110-117.
Palama TL, I Fock, YH Choi, R Verpoorte, H Kodja (2010) Biological Variation of Vanilla planifolia leaf metabolome Phytochemistry 71: 567-573.
Rapo C, Muller-Scharer H, Vrieling K, et al. (2010) Is there rapid evolutionary response in introduced populations of tansy ragwort, Jacobaea vulgaris, when exposed to biological control? Evolutionary Ecology 24 (5): 1081-1099
Rong J, Janson S, Umehara M et al. (2010) Historical and contemporary gene dispersal in wild carrot (Daucus carota ssp carota) populations. Annals of Botany 106(2): 285-296
Rong J, Z Song, TJ de Jong, X Zhang, S Sun, X Xu, H Xia, B Liu & B Lu (2010) Modelling pollen-mediated gene flow in rice: risk assessment and management of transgene escape. Plant Biotechnology Journal 8: 452-464
Shikov AN, M Kundracikova, TL Palama, ON Pozharitskaya, VM Kosman, VG Makarov, B Galambosi, HJ Kim, YP Jang, YH Choi, R Verpoorte. (2010) Phenolic constituents of Gnaphalium uliginosum. Phytochemistry Letters 3(1): 45-47.
Tamis W & TJ de Jong (2010) Transport chains of potential GGO-crops in the Netherlands, in particular oilseed rape (Brassica napus), with attention to loss of seed in the environment. Rapport CML, rapport COGEM 2010-02
Verpoorte R, YH Choi, HK Kim (2010) Metabolomics: will it stay. Phytochemical Analysis 21: 2-3
Verpoorte, R; Choi, YH; Kim, HK (2010) Metabolomics: what’s new? Flavour and Fragrance Journal 25 (3): 128-131
